Prehistoric Human Forensic DNA Analysis From Lore Highlands, Central Sulawesi With Present Day Human DNA

Main Article Content

Najlaa Illiyyien Hadid
Indra Lesmana
Niken Satuti Nur Handayani
Dwi Yani Yuniawati Umar

Abstract

Mitochondrial DNA or mtDNA(s) are inherited maternally, in other words they can only be inherited through females in a family, which makes them frequently used in forensic studies. In this research, the Hypervariable-I part (HV-1) in the D-Loop region of the ancient forensic samples acquired from Lore Highlands will be compared with present day human DNA from the same region. The steps conducted in this research includes DNA extraction, mtDNA amplification with specific primers, sequencing, and phylogenetic analysis. The analysis were done between 4 ancient forensic samples; A, B, G, and J, and 33 comparison sequences from GenBank, including ancient forensic sample acquired from Tadulako site, Lore Highlands, from previous research. The result of genetic distance analysis showed that the distance between 37 samples were very close; with difference ranging from 0,02% - 0,13%. The analysis also gives a clue about Austronesian relation with Australomelanesian. The result from phylogenetic tree reconstructions (maximum-likelihood and neighbor-joining) showed little differences. However, there is a small significant difference detected from the neighbour-joining tree construction result and will be discussed further in this paper.

Article Details

How to Cite
Hadid, N. I., Indra Lesmana, Niken Satuti Nur Handayani, & Umar, D. Y. Y. (2022). Prehistoric Human Forensic DNA Analysis From Lore Highlands, Central Sulawesi With Present Day Human DNA. KALPATARU, 31(1), 1–15. https://doi.org/10.55981/kpt.2022.2088
Section
Articles

References

Andrews, R. M., Kubacka, I., Chinnery, P. F., Lightowlers, R. N., Turnbull, D. M., & Howell, N. (1999). Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nature genetics, 23(2), 147.

Apriyana, I., K. Pradiptajati, G. A. Purnomo, H. Sudoyo (2019) Laporan Hasil: Studi Keanekaragaman Genetik Populasi Manusia di Lembah Bada dan Behoa, Sulawesi Tengah. Lembaga Biologi Molekular Eijkman. Jakarta, p. 1-8.

Bellwood, P. (2006) Austronesian Prehistory in Southeast Asia: Homeland, Expansion, and Transformation. Departement of Anthropology, ANU. Canberra, p. 96-111.

Bleidorn, Christoph. (2017) Phylogenomics. Springer Nature. Switzerland, p. 158-162.

Dharmayanti, N. L. P. I. (2011) Filogenetika Molekuler: Metode Taksonomi Organisme Berdasarkan Sejarah Evolusi. Wartazoa, 21(1): 1-10.

Gomes, S.M., van Oven, M., Souto, L., Morreira, H., Brauer, S., Bodner, M., Zimmermann, B., Huber, G., Strobl, C., Röck, A.W. and Côrte-Real, F. (2017) Lack of gene–language correlation due to reciprocal female but directional male admixture in Austronesians and non-Austronesians of East Timor. European Journal of Human Genetics, 25(2): 246.

Kim, N. Y., Lee, H. Y., Park, S. J., Yang, W. I., & Shin, K. J. (2013) Modified midi- and mini-multiplex PCR systems for mitochondrial DNA control region sequence analysis in degraded samples. Journal of Forensic Sciences, 58(3), 738–743.

Ludwig, Wolfgang & Glöckner, Frank & Yilmaz, Pelin. (2011) The Use of rRNA Gene Sequence Data in the Classification and Identification of Prokaryotes. Methods in Microbiology. 38: 349-384.

Lyons, D. M., & Lauring, A. S. (2017) Evidence for the Selective Basis of Transition-to-Transversion Substitution Bias in Two RNA Viruses. Molecular biology and evolution, 34(12), 3205–3215.

Sentausa, E. (2003) “Studi DNA Prasejarah dari Tulang Manusia Situs Arkeologi Tadulako, Sulawesi Tengah”. Skripsi. Fakultas Matematika dan Ilmu Pengetahuan Alam. Institut Pertanian Bogor. Bogor, p. 1-15.

Simanjuntak, Truman (1992) Neolitik di Indonesia: Neraca dan Perspektif Penelitian, Jurnal Arkeologi Indonesia No. 1. Jakarta: Ikatan Ahli Arkeologi Indonesia.

Simanjuntak, Truman (2015) Progres Penelitian Austronesia di Nusantara, Jurnal Amerta Vol. 33 No. 1, Pusat Arkeologi Nasional, Jakarta, p. 25-44.

Stoltzfus. A and Ryan W. Norris (2016) On the Causes of Evolutionary Transition:Transversion Bias. Molecular Biology and Evolution, 33(3): 595–602.

Tabadda, K., T. Jean, L. Jun Hun, C. Yao-Ming, L. Marie, M. Marta, K. Toomas, D. Maria. (2010) Philippine Mitochondrial DNA Diversity: A Populated Viaduct between Taiwan and Indonesia?, Molecular Biology and Evolution, 27(1): 21–31.

Trisyani, N. & D. A. Rahayu. (2020) DNA Barcoding of razor clam Solen spp. (Solinidae, Bivalvia) in Indonesian Beaches. Biodiversitas, 21(2), 478-484.

Yang, Z., & Rannala, B. (2012) Molecular phylogenetics: principles and practice. Nature reviews. Genetics, 13(5), 303–314.

Yuniawati, D. Y. (2000) Laporan Penelitian Arkeologi di Situs Megalitik Lembah Behoa, Kecamatan Lore Utara, Kabupaten Poso, Provinsi Sulawesi Tengah. Berita Penelitian Arkeologi No. 50. Jakarta: Proyek Peningkatan Penelitian Arkeologi.

Yuniawati, D.Y., Anggraeni, Mahirta, Indah Asikin Nurani, A. Kriswandhono, Handiman Rico, Nasrullah Aziz, Sri Wahyuni, Rizky Fardhyan, Sriwigati, Rustan Lebe, Abdullah, N. Budiharjo, Sri Wasisto. (2012) LPA Kajian Pluralisme Budaya Austronesia dan Melanesia Nusantara: Peradaban Penutur Austronesia di Kawasan Lembah Bada, Sulawesi Tengah. Jakarta: Pusat Arkeologi Nasional.

Yuniawati, D. Y., A. S. Sayekti, I. A. Nurani, S. Noerwidi, A. Kriswandhono, H. Rico, N. Budiharjo, C. I. Darojah, S. Wahyuni, N. Aziz, Sriwigati, S. Wasisto, Ngadiran (2013) LPA Kajian Pluralisme Budaya Austronesia dan Melanesia Nusantara: Peradaban Penutur Austronesia di Kawasan Lembah Besoa, Kec. Lore Utara, Kab. Poso, Sulawesi Tengah. Jakarta: Pusat Arkeologi Nasional.

Yuniawati, D. Y. (2016) Keterkaitan Etnik Da’a di Wilayah Pedalaman Pegunungan Gawalise, Sulawesi Bagian Tengah dengan Populasi Austromelanesid di Sulawesi. Amerta. 34(1), p. 1-18.

Yuniawati-Umar, D. Y. (2020) Budaya Megalitik di Kawasan Dataran Tinggi Lore, Kabupaten Poso, Provinsi Sulawesi Tengah: Kajian Terhadap Asal Usul dan Proses Adaptasi. Disertasi. Fakultas Ilmu Budaya. Universitas Gadjah Mada. Yogyakarta, p. 5-560.

Most read articles by the same author(s)